The Colletotrichum gloeosporioides species complex
Identifieur interne : 001183 ( Main/Exploration ); précédent : 001182; suivant : 001184The Colletotrichum gloeosporioides species complex
Auteurs : B. S. Weir [Nouvelle-Zélande] ; P. R. Johnston [Nouvelle-Zélande] ; U. Damm [Pays-Bas]Source :
- Studies in Mycology [ 0166-0616 ] ; 2012.
Abstract
The limit of the
Url:
DOI: 10.3114/sim0011
PubMed: 23136459
PubMed Central: 3458417
Affiliations:
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Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The <italic>Colletotrichum gloeosporioides</italic>
species complex</title>
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<author><name sortKey="Damm, U" sort="Damm, U" uniqKey="Damm U" first="U." last="Damm">U. Damm</name>
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<series><title level="j">Studies in Mycology</title>
<idno type="ISSN">0166-0616</idno>
<idno type="eISSN">1872-9797</idno>
<imprint><date when="2012">2012</date>
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<front><div type="abstract" xml:lang="en"><p id="P6">The limit of the <italic>Colletotrichum gloeosporioides</italic>
species complex is defined genetically, based on a strongly supported clade within the <italic>Colletotrichum</italic>
ITS gene tree. All taxa accepted within this clade are morphologically more or less typical of the broadly defined <italic>C. gloeosporioides</italic>
, as it has been applied in the literature for the past 50 years. We accept 22 species plus one subspecies within the <italic>C. gloeosporioides</italic>
complex. These include <italic>C. asianum</italic>
, <italic>C. cordylinicola</italic>
, <italic>C. fructicola</italic>
, <italic>C. gloeosporioides</italic>
, <italic>C. horii</italic>
, <italic>C. kahawae</italic>
subsp. <italic>kahawae</italic>
, <italic>C. musae</italic>
, <italic>C. nupharicola</italic>
, <italic>C. psidii</italic>
, <italic>C. siamense</italic>
, <italic>C. theobromicola</italic>
, <italic>C. tropicale</italic>
, and <italic>C. xanthorrhoeae</italic>
, along with the taxa described here as new, <italic>C. aenigma</italic>
, <italic>C. aeschynomenes</italic>
, <italic>C. alatae</italic>
, <italic>C. alienum</italic>
, <italic>C. aotearoa</italic>
, <italic>C. clidemiae</italic>
, <italic>C. kahawae</italic>
subsp. <italic>ciggaro</italic>
, <italic>C. salsolae</italic>
, and <italic>C. ti</italic>
, plus the nom. nov. <italic>C. queenslandicum</italic>
(for <italic>C. gloeosporioides</italic>
var. <italic>minus</italic>
). All of the taxa are defined genetically on the basis of multi-gene phylogenies. Brief morphological descriptions are provided for species where no modern description is available. Many of the species are unable to be reliably distinguished using ITS, the official barcoding gene for fungi. Particularly problematic are a set of species genetically close to <italic>C. musae</italic>
and another set of species genetically close to <italic>C. kahawae</italic>
, referred to here as the Musae clade and the Kahawae clade, respectively. Each clade contains several species that are phylogenetically well supported in multi-gene analyses, but within the clades branch lengths are short because of the small number of phylogenetically informative characters, and in a few cases individual gene trees are incongruent. Some single genes or combinations of genes, such as glyceraldehyde-3-phosphate dehydrogenase and glutamine synthetase, can be used to reliably distinguish most taxa and will need to be developed as secondary barcodes for species level identification, which is important because many of these fungi are of biosecurity significance. In addition to the accepted species, notes are provided for names where a possible close relationship with <italic>C. gloeosporioides sensu lato</italic>
has been suggested in the recent literature, along with all subspecific taxa and <italic>formae speciales</italic>
within <italic>C. gloeosporioides</italic>
and its putative teleomorph <italic>Glomerella cingulata</italic>
.</p>
<sec id="S1"><title>Taxonomic novelties:</title>
<p id="P7"><bold>Name replacement</bold>
- <italic>C. queenslandicum</italic>
B. Weir & P.R. Johnst. <bold>New species</bold>
- <italic>C. aenigma</italic>
B. Weir & P.R. Johnst., <italic>C. aeschynomenes</italic>
B. Weir & P.R. Johnst., <italic>C. alatae</italic>
B. Weir & P.R. Johnst., C<italic>. alienum</italic>
B. Weir & P.R. Johnst, <italic>C. aotearoa</italic>
B. Weir & P.R. Johnst., <italic>C. clidemiae</italic>
B. Weir & P.R. Johnst., <italic>C. salsolae</italic>
B. Weir & P.R. Johnst., <italic>C. ti</italic>
B. Weir & P.R. Johnst. <bold>New subspecies</bold>
- <italic>C. kahawae</italic>
subsp. <italic>ciggaro</italic>
B. Weir & P.R. Johnst. <bold>Typification: Epitypification</bold>
- <italic>C. queenslandicum</italic>
B. Weir & P.R. Johnst.</p>
</sec>
</div>
</front>
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<affiliations><list><country><li>Nouvelle-Zélande</li>
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